The Importance of Cytogenomics in the Diagnostic Pathway
Cytogenomics is the study of genetics that evaluates chromosomes and their relation to diseases. Through a combined analysis of chromosomes and molecular tests, clinicians can better understand and treat disease states. This complex, but necessary, part of the diagnostic pathway is critical because Cytogenomics has a direct impact on diagnosis.1
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How does diagnosis of results occur?
Changes in chromosomes number or structure helps us to diagnose disease states, such as cancer and congenital disorders. Cytogenomics explores 2 aspects of human DNA to guide a diagnostic process: chromosome evaluation and molecular testing, such as Fluorescence In-Situ hybridization (FISH). Chromosomes are a “macro” look at the 23 paired compliments of human DNA.
Normal female karyotype
After specimen processing in the laboratory occurs, chromosomes can be arranged and analyzed by size, centromeric location and banding pattern into an image called a karyotype. Chromosome analysis of metaphase spreads and karyotyping provides a more global overview or “map of the territory” to help navigate the diagnostic process.
Molecular testing by FISH is a “micro” look at highly specific DNA sequences or genes. By attaching a fluorescently labelled probe, or tag, to the targeted area on the chromosome of interest, it can be visualized under a fluorescent microscope . FISH testing provides the specific “street address” or location on the chromosome map that defines with great specificity clinical information to assist in generating a diagnosis.
How are results determined? The Cytogenomics diagnostic pathway
Cytogenomic analysis can be ordered from a variety of cell sources, including peripheral blood lymphocytes, bone marrow, ascites, skin, and solid tumors. Each of these specimen types are grown, or cultured, in different ways in the Cytogenomics laboratory to obtain metaphase spreads for chromosome analysis and/or FISH. Cultured cells are processed and “fixed” with a 1:1 methanol:acetic acid solution, then dropped onto glass slides under consistent humidity to allow the chromosomes to spread for visualization. The glass slides with the chromosome spreads are then colored with a contrasting stain and visualized under a light microscope. Some solid tumors are not cultured and are embedded in a wax paraffin block. Those blocks are then cut into thin sections and placed on a positively charged glass slide and used specifically for FISH assays. Chromosome analysis is performed by a highly trained technologist and assisted with a digital imaging system using highly intuitive chromosomal software. Utilization of digital solutions increase efficiencies and can be easily integrated with high speed slide scanning systems and automated analysis software platforms to speed the time to result to treating clinicians.
Fluorescence In-Situ Hybridization, or FISH, assays can be done on several types of specimens, cultured chromosomes slides, as described above, or Formalin Fixed Paraffin Embedded Tissue (FFPET). Chromosome FISH is performed on cells captured in metaphase or interphase cycles of division.